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Most recent publications

Fernandez-de-Cossio-Diaz, Jorge; Uguzzoni, Guido; Pagnani, Andrea (2021)
Unsupervised inference of protein fitness landscape from deep mutational scan. In: MOLECULAR BIOLOGY AND EVOLUTION, vol. 38, pp. 318-328. ISSN 0737-4038 Download fulltext
Trinquier, Jeanne; Uguzzoni, Guido; Pagnani, Andrea; Zamponi, Francesco; Weigt, Martin (2021)
Efficient generative modeling of protein sequences using simple autoregressive models. In: NATURE COMMUNICATIONS, vol. 12. ISSN 2041-1723 Download fulltext
Braunstein, Alfredo; Gueudre, Thomas; Pagnani, Andrea; Pieropan, Mirko (2021)
Expectation propagation on the diluted Bayesian classifier. In: PHYSICAL REVIEW. E, vol. 103. ISSN 2470-0045 Download fulltext
Muntoni, Anna Paola; Pagnani, Andrea; Weigt, Martin; Zamponi, Francesco (2020)
Aligning biological sequences by exploiting residue conservation and coevolution. In: PHYSICAL REVIEW. E, vol. 102. ISSN 2470-0045 Download fulltext
Braunstein, Alfredo; Muntoni, Anna Paola; Pagnani, Andrea; Pieropan, Mirko (2020)
Compressed sensing reconstruction using Expectation Propagation. In: JOURNAL OF PHYSICS. A, MATHEMATICAL AND THEORETICAL, vol. 53. ISSN 1751-8113 Download fulltext
Usai, G.; Cirrincione, S.; Re, A.; Manfredi, M.; Pagnani, A.; Pessione, E.; Mazzoli, R. (2020)
Clostridium cellulovorans metabolism of cellulose as studied by comparative proteomic approach. In: JOURNAL OF PROTEOMICS, vol. 216. ISSN 1874-3919
Gueudre, T.; Baldassi, C.; Pagnani, A.; Weigt, M. (2020)
Predicting interacting protein pairs by coevolutionary paralog matching. In: Protein-Protein Interaction Networks / S.N., S.L., Humana Press Inc., pp. 57-65. ISBN: 978-1-4939-9872-2
Rizzato, F.; Zamuner, S.; Pagnani, A.; Laio, A. (2019)
A common root for coevolution and substitution rate variability in protein sequence evolution. In: SCIENTIFIC REPORTS, vol. 9. ISSN 2045-2322 Download fulltext
Paola Muntoni, Anna; Di´az Herna´ndez Rojas, Rafael; Braunstein, Alfredo; Pagnani, ... (2019)
Nonconvex image reconstruction via expectation propagation. In: PHYSICAL REVIEW. E, vol. 100. ISSN 2470-0053 Download fulltext
Facco, Elena; Pagnani, Andrea; Russo, Elena Tea; Laio, Alessandro (2019)
The intrinsic dimension of protein sequence evolution. In: PLOS COMPUTATIONAL BIOLOGY, vol. 15. ISSN 1553-734X Download fulltext
Martirosyan, Araks; Del Giudice, Marco; ENRICO BENA, CHIARA; Pagnani, Andrea; Bosia, ... (2019)
Kinetic modelling of competition and depletion of shared miRNAs by competing endogenous RNAs. In: Methods in Molecular Biology / S.N., S.L., Humana Press Inc., pp. 367-409. ISBN: 978-1-4939-8981-2
Franco, Irene; Johansson, Anna; Olsson, Karl; Vrtacnik, Peter; Lundin, Pär; Helgadottir, ... (2018)
Somatic mutagenesis in satellite cells associates with human skeletal muscle aging. In: NATURE COMMUNICATIONS, vol. 9. ISSN 2041-1723 Download fulltext
Marruzzo, Alessia; Tyagi, Payal; Antenucci, Fabrizio; Pagnani, Andrea; Leuzzi, Luca (2017)
Inverse problem for multi-body interaction of nonlinear waves. In: SCIENTIFIC REPORTS, vol. 7. ISSN 2045-2322 Download fulltext
Martirosyan, Araks; De Martino, Andrea; Pagnani, Andrea; Marinari, Enzo (2017)
CeRNA crosstalk stabilizes protein expression and affects the correlation pattern of interacting proteins. In: SCIENTIFIC REPORTS, vol. 7. ISSN 2045-2322 Download fulltext
Braunstein, Alfredo; Muntoni, Anna Paola; Pagnani, Andrea (2017)
An analytic approximation of the feasible space of metabolic networks. In: NATURE COMMUNICATIONS, vol. 8. ISSN 2041-1723 Download fulltext
Bosia, Carla; Sgrò, Francesco; Conti, Laura; Baldassi, Carlo; Cavallo, Federica; Di ... (2017)
RNAs competing for microRNAs mutually influence their fluctuations in a highly non-linear microRNA-dependent manner in single cells. In: GENOME BIOLOGY, vol. 18, pp. 17-30. ISSN 1474-760X Download fulltext
Feinauer, Christoph; Szurmant, Hendrik; Weigt, Martin; Pagnani, Andrea (2016)
Inter-Protein Sequence Co-Evolution Predicts Known Physical Interactions in Bacterial Ribosomes and the Trp Operon. In: PLOS ONE, vol. 11, pp. 1-18. ISSN 1932-6203 Download fulltext
Gueudre, Thomas; Baldassi, Carlo; Zamparo, Marco; Weigt, Martin; Pagnani, Andrea (2016)
Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis. In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, vol. 113, pp. 12186-12191. ISSN 0027-8424
Tyagi, Payal; Marruzzo, Alessia; Pagnani, Andrea; Antenucci, Fabrizio; Leuzzi, Luca (2016)
Regularization and decimation pseudolikelihood approaches to statistical inference inXYspin models. In: PHYSICAL REVIEW. B, vol. 94. ISSN 2469-9950 Download fulltext
Bologna, Cinzia; Buonincontri, Roberta; Serra, Sara; Vaisitti, Tiziana; Audrito, ... (2016)
SLAMF1 regulation of chemotaxis and autophagy determines CLL patient response. In: THE JOURNAL OF CLINICAL INVESTIGATION, vol. 126, pp. 181-194. ISSN 1558-8238 Download fulltext
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